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Selected publications in the past 5 years
  1. Chen Z, Wang Y, Zhai Y-F, Song J & Zhang Z (2013) ZincExplorer: an accurate hybrid method to improve the prediction of zinc-binding sites from protein sequences. Mol BioSyst, 9: 2213-2222.
  2. Chen Z, Zhou Y, Song J & Zhang Z (2013) hCKSAAP_UbSite: Improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties. BBA - Proteins and Proteomics, 1834: 1461-1467.
  3. Dong X, Zhang Y-J & Zhang Z (2013) Using weakly conserved motifs hidden in secretion signals to identify type-III effectors from bacterial pathogen genomes. PLoS ONE, 8: e56632.
  4. Han L, Zhang Y-J, Song J, Liu MS & Zhang Z (2012) Identification of catalytic residues using a novel feature that Integrates the microenvironment and geometrical location properties of residues. PLoS ONE, 7: e41370.
  5. Li Z-G, He F, Zhang Z & Peng Y-L (2012) Prediction of protein-protein interactions between Ralstonia solanacearum and Arabidopsis thaliana. Amino Acids, 42: 2363-2371.
  6. Zhou Y, Zhou Y-S, He F, Song J & Zhang Z (2012) Can simple codon pair usage predict protein-protein interaction? Mol BioSyst, 8: 1396-1404.
  7. Zhou Y, Liu J, Han L, Li Z-G & Zhang Z (2011) Comprehensive analysis of tandem amino acid repeats from ten angiosperm genomes. BMC Genomics, 12: 632.
  8. Wang X-F, Chen Z, Wang C, Yan R-X, Zhang Z & Song J (2011) Predicting residue-residue contacts and helix-helix interactions in transmembrane proteins using an integrative feature-based random forest approach. PLoS ONE, 6: e26767.
  9. Chen Z, Chen Y-Z, Wang X-F, Wang C, Yan R-X & Zhang Z (2011) Prediction of ubiquitination sites by using the composition of k-spaced amino acid pairs. PLoS ONE, 6: e22930.
  10. Wang T-Y, He F, Hu Q-W & Zhang Z (2011) A predicted protein–protein interaction network of the filamentous fungus Neurospora crassa. Mol BioSyst,7: 2278-2285.
  11. Yan R-X, Chen Z & Zhang Z (2011)  Outer membrane proteins can be simply identified using secondary structure  element alignment. BMC Bioinformatics, 12: 76.
  12. He F, Zhou Y & Zhang Z (2010) Deciphering the Arabidopsis floral transition process by integrating a protein-protein interaction network and gene expression data. Plant Physiol, 153: 1492-1505.
  13. Yan R-X, Si J-N, Wang C & Zhang Z  (2009) DescFold: A web server for protein fold recognition. BMC Bioinformatics, 10: 416.
  14. He F, Zhang Y, Chen H, Zhang Z & Peng Y-L (2008) The prediction of protein-protein interaction networks in rice blast fungus. BMC Genomics, 9: 519.
  15. Tang Y-R, Sheng Z-Y, Chen Y-Z & Zhang Z (2008) An improved prediction of catalytic residues in enzyme structures. Protein Engineering Design & Selection (PEDS), 21: 295-302.
  16. Chen Y-Z, Tang Y-R, Sheng Z-Y & Zhang Z (2008) Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of k-spaced amino acid pairs. BMC Bioinformatics, 9: 101.
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